SNP Profiles matching NA 33

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	GG	CC	GG	AC	CG	AG	CT	GG	GG	AA	CC
1._RUQ_1577	_	_	CC	GG	CC	_	AC	CG	AG	CT	_	_	AA	_
2._NA_33	_	_	CC	GG	CC	_	AC	GG	AG	CT	_	_	AA	_
3._RUQ_1238	TT	CC	CC	GG	CC	GG	AA	CG	AG	CC	GG	GG	AA	CC
4._GC-05-169-4-22	TT	CC	CC	GG	CC	GG	AA	CG	AG	CC	GG	GG	AA	CC
5._GC-05-169-4-22	TT	CC	CC	GG	CC	GG	AA	CG	AG	CC	GG	GG	AA	CC
6._GC-05-169-4-22	TT	CC	CC	GG	CC	GG	AA	CG	AG	CC	GG	GG	AA	CC
7._GC-05-169-4-22	TT	CC	CC	GG	CC	GG	AA	CG	AG	CC	GG	GG	AA	CC
8._RUQ_691	TT	CC	AC	GG	CT	GG	AC	CG	AA	CT	GG	GG	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CT	GG	GG	AA	CC	CT	TT	GG	AG	TT	CC	CG
1._RUQ_1577	AA	CC	CT	GG	GG	AA	_	CT	_	GG	_	_	_	CG
2._NA_33	AA	CC	CT	GG	GG	AA	_	CT	_	GG	_	_	_	CG
3._RUQ_1238	AA	CC	CT	GG	GG	AC	CC	CC	TT	GG	AG	TT	CC	CG
4._GC-05-169-4-22	AA	CC	CT	GG	GG	AC	CC	CC	CT	GG	AG	TT	CC	CG
5._GC-05-169-4-22	AA	CC	CT	GG	GG	AC	CC	CC	CT	GG	AG	TT	CC	CG
6._GC-05-169-4-22	AA	CC	CT	GG	GG	AC	CC	CC	CT	GG	AG	TT	CC	CG
7._GC-05-169-4-22	AA	CC	CT	GG	GG	AC	CC	CC	CT	GG	AG	TT	CC	CG
8._RUQ_691	AA	CC	TT	GG	GG	AA	CC	CC	TT	GG	GG	TT	CC	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AG	CC	CC	GG	AG	TT	GT	TT	CC	TT	CC	AA
1._RUQ_1577	_	CC	AG	_	CC	_	_	_	GT	_	_	TT	CC	AG
2._NA_33	_	CC	AG	_	CC	_	_	_	GT	_	_	TT	CC	AA
3._RUQ_1238	CC	CC	AG	CC	CC	GG	GG	TT	GT	TT	CC	TT	CC	AG
4._GC-05-169-4-22	CC	CC	AG	CC	CC	GG	GG	TT	GT	TT	CC	TT	CC	AG
5._GC-05-169-4-22	CC	CC	AG	CC	CC	GG	GG	TT	GT	TT	CC	TT	CC	AG
6._GC-05-169-4-22	CC	CC	AG	CC	CC	GG	GG	TT	GT	TT	CC	TT	CC	AG
7._GC-05-169-4-22	CC	CC	AG	CC	CC	GG	GG	TT	GT	TT	CC	TT	CC	AG
8._RUQ_691	CC	CC	AG	CC	CC	GG	GG	TT	GT	TT	CC	TT	CG	AA

Input profile: NA_33 RUQ_1577

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._NA_33 RUQ_1577

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._NA_33

97.9 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A D371 T2

Dapeng Zhang, 2016

3._NA_670 RUQ_1238

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._NA_670 GC-05-169-4-22

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

Mars, 2018

5._NA_670 GC-05-169-4-22

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

Mars, 2018

6._NA_670 GC-05-169-4-22

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

Mars, 2018

7._NA_670 GC-05-169-4-22

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

Mars, 2018

8._SPA_16_[COL] RUQ_691

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484

SNP Profiles matching NA 33

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Input profile: NA_33 RUQ_1577

1._NA_33 RUQ_1577

97.9 % 24 shared markers

2._NA_33

97.9 % 24 shared markers

3._NA_670 RUQ_1238

92.9 % 42 shared markers

4._NA_670 GC-05-169-4-22

91.7 % 42 shared markers

5._NA_670 GC-05-169-4-22

91.7 % 42 shared markers

6._NA_670 GC-05-169-4-22

91.7 % 42 shared markers

7._NA_670 GC-05-169-4-22

91.7 % 42 shared markers

8._SPA_16_[COL] RUQ_691

90.5 % 42 shared markers

97.9 %
24 shared markers

97.9 %
24 shared markers

92.9 %
42 shared markers

91.7 %
42 shared markers

91.7 %
42 shared markers

91.7 %
42 shared markers

91.7 %
42 shared markers

90.5 %
42 shared markers